Related Links

• University Bioinformatics Programs
• UCLA interdisciplinary Bioinformatics Program Proposal

Structural Links:

• AMBER (a molecular mechanical force field for the simulation of biomolecules)

Genomics - related Links (Courtesy of Dr. Sue Naylor)

Major sites with representations of the genome:

• NCBI: http://www.ncbi.nlm.nih.gov/
• Ensembl: http://www.ensembl.org/
• European Bioinformatics Institute: http://www.ebi.ac.uk/
• The Golden Path: http://genome.ucsc.edu/

Other sites:

• Genome Database: http://gdbwww.gdb.org/
• Sanger Centre: http://www.sanger.ac.uk/
• Washington University Sequencing Center: http://genome.wustl.edu/gsc/
• Baylor College of Medicine Sequencing Center: http://www.hgsc.bcm.tmc.edu/
• Whitehead Institute: http://www-genome.wi.mit.edu/
• Joint Genome Institute: http://www.jgi.doe.gov/

Bioinformatics Tools:

• Steve Hardies' links: http://www.biochem.uthscsa.edu/~hs_lab/frames/bkmk.html
• Pedro's BioMolecular Research Tools: http://www.public.iastate.edu/~pedro/research_tools.html
• Biotechnology Information Directory: http://www.cato.com/biotech/bio-software.html
• BioToolKit: http://www.biosupplynet.com/cfdocs/btk/btk.cfm

Miscellaneous DNA analysis software:

• NEBCutter - A well done DNA restriction digest web tool from New England Biolabs http://tools.neb.com/NEBcutter2
• Biowire (Jellyfish): http://www.biowire.com/bw_jsp/home_top.jsp
• pDRAW32: http://www.crosswinds.net/~acaclone/
• BCM Launcher: http://www.hgsc.bcm.tmc.edu/
• Matilda: http://www.mbg.cornell.edu/shalloway/matilda.html
• GRAIL (Gene finding programs): http://compbio.ornl.gov/Grail-1.3/, http://grail.lsd.ornl.gov/grailexp/
• SimVector: http://premierbiosoft.com/plasmidmap/plasmidmap.html